last commit before modifying image

9 files changed, 163 insertions, 84 deletions

diff --git a/agenda.org b/agenda.org
index 1182166..2704851 100644
--- a/agenda.org
+++ b/agenda.org
@@ -67,10 +67,12 @@ SCHEDULED: <2025-08-09 Sat>
 These are some habits I want to track. They are repeated according to a calendar schedule in
 general.
 ** TODO Supplements
-SCHEDULED: <2025-03-22 Sat .+1d>
+SCHEDULED: <2025-08-28 Thu .+1d>
 :PROPERTIES:
-:LAST_REPEAT: [2025-03-21 Fri 04:48]
+:LAST_REPEAT: [2025-08-27 Wed 21:46]
 :END:
+- State "DONE"       from "TODO"       [2025-08-27 Wed 21:46]
+- State "DONE"       from "TODO"       [2025-08-25 Mon 21:17]
 - State "DONE"       from "TODO"       [2025-03-21 Fri 04:48]
 - State "DONE"       from "TODO"       [2025-03-13 Thu 09:52]
 - State "DONE"       from "TODO"       [2025-03-11 Tue 00:34]
@@ -81,18 +83,21 @@ Current stack:
 - Vitamin D3
 - EPA/DHA
 ** TODO Pushups
-SCHEDULED: <2025-03-22 Sat .+1d>
+SCHEDULED: <2025-08-28 Thu .+1d>
 :PROPERTIES:
-:LAST_REPEAT: [2025-03-21 Fri 04:49]
+:LAST_REPEAT: [2025-08-27 Wed 21:46]
 :END:
+- State "DONE"       from "TODO"       [2025-08-27 Wed 21:46]
+- State "DONE"       from "TODO"       [2025-08-25 Mon 21:16]
 - State "DONE"       from "TODO"       [2025-03-21 Fri 04:49]
 - State "DONE"       from "TODO"       [2025-03-11 Tue 00:16]
 I want to be healthy.
 ** TODO Run
-SCHEDULED: <2025-06-27 Fri .+1d>
+SCHEDULED: <2025-08-26 Tue .+1d>
 :PROPERTIES:
-:LAST_REPEAT: [2025-06-26 Thu 23:22]
+:LAST_REPEAT: [2025-08-25 Mon 21:17]
 :END:
+- State "DONE"       from "TODO"       [2025-08-25 Mon 21:17]
 - State "DONE"       from "TODO"       [2025-06-26 Thu 23:22]
 I want to be able to run or bike every day so that I get my exercise in.
 ** TODO Stretch
diff --git a/config/emacs.el b/config/emacs.el
index ddde018..76948b5 100644
--- a/config/emacs.el
+++ b/config/emacs.el
@@ -4,6 +4,11 @@
 
 (use-package emacs
   :custom
+  ;; global defaults
+  (setq-default indent-tabs-mode nil)  ;; no real tabs, only spaces
+  (setq-default tab-width 2)           ;; just in case, make a "tab" show as 4 spaces
+  (setq-default standard-indent 2)     ;; base indentation
+
   ;; Startup errors
   (warning-minimum-level :emergency "Supress emacs warnings")
   (confirm-kill-processes nil "Don't ask to quit")
@@ -254,22 +259,32 @@
   :after (org)
   :hook (org-mode . (lambda () (org-superstar-mode 1))))
 
-(use-package eglot
-  :hook
-  (prog-mode . eglot-ensure)
-  (nix-mode . eglot-ensure)
-  :config
-  (add-to-list 'eglot-server-programs '(nix-mode . ("nil"))))
+;; (use-package eglot
+ ;;   :hook
+ ;;   (prog-mode . eglot-ensure)
+ ;;   (nix-mode . eglot-ensure)
+ ;;   :config
+ ;;   (add-to-list 'eglot-server-programs '(nix-mode . ("nil"))))
+
+ (use-package lsp
+   :hook
+   (prog-mode . lsp))
 
-(use-package lsp
-  :hook
-  (prog-mode . lsp))
+(with-eval-after-load 'lsp-mode
+  (setq lsp-typescript-format-enable t
+        lsp-typescript-indent-size 4
+        lsp-typescript-tab-size 4
+        lsp-typescript-indent-style "spaces"))
+
+(use-package editorconfig
+  :config
+  (editorconfig-mode 1))
 
-(use-package flycheck
-  :config (global-flycheck-mode))
+ (use-package flycheck
+   :config (global-flycheck-mode))
 
-(use-package platformio-mode
-  :hook (prog-mode . platformio-conditionally-enable))
+ (use-package platformio-mode
+:hook (prog-mode . platformio-conditionally-enable))
 
 (use-package irony-mode
   :hook (
@@ -409,7 +424,7 @@
     "m l" '(lyrics-fetcher-show-lyrics :wk "Music lyrics")
     "o p" '(treemacs :wk "Project Drawer")
     "o P" '(treemacs-projectile :wk "Import Projectile project to treemacs")
-    "f f" '(eglot-format :wk "Format code buffer")
+    ;; "f f" '(eglot-format :wk "Format code buffer")
     "i p c" '(prestonpan :wk "Connect to my IRC server")
     "i l c" '(liberachat :wk "Connect to libera chat server")
     "i e c" '(efnet :wk "Connect to efnet chat server")
diff --git a/config/emacs.org b/config/emacs.org
index ca040d4..dab81d6 100644
--- a/config/emacs.org
+++ b/config/emacs.org
@@ -25,6 +25,11 @@ Emacs is self documenting, after all!
 #+begin_src emacs-lisp
   (use-package emacs
     :custom
+    ;; global defaults
+    (setq-default indent-tabs-mode nil)  ;; no real tabs, only spaces
+    (setq-default tab-width 2)           ;; just in case, make a "tab" show as 4 spaces
+    (setq-default standard-indent 2)     ;; base indentation
+
     ;; Startup errors
     (warning-minimum-level :emergency "Supress emacs warnings")
     (confirm-kill-processes nil "Don't ask to quit")
@@ -332,22 +337,32 @@ Org superstar adds those nice looking utf-8 bullets:
 ** LSP
 We set up eglot, the LSP manager for emacs, now built in:
 #+begin_src emacs-lisp
-  (use-package eglot
-    :hook
-    (prog-mode . eglot-ensure)
-    (nix-mode . eglot-ensure)
-    :config
-    (add-to-list 'eglot-server-programs '(nix-mode . ("nil"))))
+   ;; (use-package eglot
+   ;;   :hook
+   ;;   (prog-mode . eglot-ensure)
+   ;;   (nix-mode . eglot-ensure)
+   ;;   :config
+   ;;   (add-to-list 'eglot-server-programs '(nix-mode . ("nil"))))
+
+   (use-package lsp
+     :hook
+     (prog-mode . lsp))
 
-  (use-package lsp
-    :hook
-    (prog-mode . lsp))
+  (with-eval-after-load 'lsp-mode
+    (setq lsp-typescript-format-enable t
+          lsp-typescript-indent-size 4
+          lsp-typescript-tab-size 4
+          lsp-typescript-indent-style "spaces"))
+
+  (use-package editorconfig
+    :config
+    (editorconfig-mode 1))
 
-  (use-package flycheck
-    :config (global-flycheck-mode))
+   (use-package flycheck
+     :config (global-flycheck-mode))
 
-  (use-package platformio-mode
-    :hook (prog-mode . platformio-conditionally-enable))
+   (use-package platformio-mode
+  :hook (prog-mode . platformio-conditionally-enable))
 #+end_src
 *** C/C++
 Specific configuration for C (I also use the clangd lsp):
@@ -514,7 +529,7 @@ emacs keybindings.
       "m l" '(lyrics-fetcher-show-lyrics :wk "Music lyrics")
       "o p" '(treemacs :wk "Project Drawer")
       "o P" '(treemacs-projectile :wk "Import Projectile project to treemacs")
-      "f f" '(eglot-format :wk "Format code buffer")
+      ;; "f f" '(eglot-format :wk "Format code buffer")
       "i p c" '(prestonpan :wk "Connect to my IRC server")
       "i l c" '(liberachat :wk "Connect to libera chat server")
       "i e c" '(efnet :wk "Connect to efnet chat server")
diff --git a/config/nix.org b/config/nix.org
index 125547a..13cd687 100644
--- a/config/nix.org
+++ b/config/nix.org
@@ -32,6 +32,9 @@ so that adding new configurations that add modifications is made simple.
         url = "github:oddlama/nix-topology";
         inputs.nixpkgs.follows = "nixpkgs";
       };
+      deep-research = {
+        url = "github:ret2pop/ollama-deep-researcher";
+      };
       home-manager = {
   	    url = "github:nix-community/home-manager/release-25.05";
   	    inputs.nixpkgs.follows = "nixpkgs";
@@ -50,7 +53,7 @@ so that adding new configurations that add modifications is made simple.
       };
     };
 
-    outputs = { self, nixpkgs, home-manager, nur, disko, lanzaboote, sops-nix, nix-topology, nixos-dns, ... }@attrs:
+    outputs = { self, nixpkgs, home-manager, nur, disko, lanzaboote, sops-nix, nix-topology, nixos-dns, deep-research, ... }@attrs:
       let
         system = "x86_64-linux";
         pkgs = import nixpkgs { inherit system; };
@@ -69,6 +72,11 @@ so that adding new configurations that add modifications is made simple.
               { networking.hostName = "${hostname}"; }
               nix-topology.nixosModules.default
             ] else [
+              {
+                environment.systemPackages = with nixpkgs.lib; [
+                  deep-research.packages.${system}.deep-research
+                ];
+              }
               nix-topology.nixosModules.default
               lanzaboote.nixosModules.lanzaboote
               disko.nixosModules.disko
@@ -1516,6 +1524,7 @@ I have many imports that we'll go through next.
   			                kdePackages.kdenlive
   			                kicad
                         murmur
+                        silver-searcher
   					          ]) else []);
 
       monorepo.profiles = {
@@ -2891,6 +2900,7 @@ standard.
       export EXTRA_CCFLAGS="-I/usr/include"
       source ${pkgs.zsh-vi-mode}/share/zsh-vi-mode/zsh-vi-mode.plugin.zsh
       export QT_QPA_PLATFORM="wayland"
+      export OLLAMA_MODEL="qwen3:14b"
       '';
 
       localVariables = {
diff --git a/journal/20250826.org b/journal/20250826.org
new file mode 100644
index 0000000..3347956
--- /dev/null
+++ b/journal/20250826.org
@@ -0,0 +1,11 @@
+#+TITLE: Daily Journal
+#+STARTUP: showeverything
+#+DESCRIPTION: My daily journal entry
+#+AUTHOR: Preston Pan
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../style.css" />
+#+html_head: <script src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script>
+#+html_head: <script id="MathJax-script" async src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
+#+options: broken-links:t
+* Tuesday, 26 August 2025
+** 03:10 
+I'm doing some topology, and I really hate it, but it builds character. I've decided to start to become more consistent.
diff --git a/nix/flake.lock b/nix/flake.lock
index 42dba61..393915b 100644
--- a/nix/flake.lock
+++ b/nix/flake.lock
@@ -21,6 +21,24 @@
         "type": "github"
       }
     },
+    "deep-research": {
+      "inputs": {
+        "nixpkgs": "nixpkgs"
+      },
+      "locked": {
+        "lastModified": 1755738911,
+        "narHash": "sha256-BobMSFfhK8GprfN6V+BedMj6d1v/pKce6sqiETHiv48=",
+        "owner": "ret2pop",
+        "repo": "ollama-deep-researcher",
+        "rev": "678a3ef8e8d8ded2aab9288fd7396579a13aec46",
+        "type": "github"
+      },
+      "original": {
+        "owner": "ret2pop",
+        "repo": "ollama-deep-researcher",
+        "type": "github"
+      }
+    },
     "devshell": {
       "inputs": {
         "nixpkgs": [
@@ -49,11 +67,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1750040002,
-        "narHash": "sha256-KrC9iOVYIn6ukpVlHbqSA4hYCZ6oDyJKrcLqv4c5v84=",
+        "lastModified": 1755519972,
+        "narHash": "sha256-bU4nqi3IpsUZJeyS8Jk85ytlX61i4b0KCxXX9YcOgVc=",
         "owner": "nix-community",
         "repo": "disko",
-        "rev": "7f1857b31522062a6a00f88cbccf86b43acceed1",
+        "rev": "4073ff2f481f9ef3501678ff479ed81402caae6d",
         "type": "github"
       },
       "original": {
@@ -239,11 +257,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1749154018,
-        "narHash": "sha256-gjN3j7joRvT3a8Zgcylnd4NFsnXeDBumqiu4HmY1RIg=",
+        "lastModified": 1753592768,
+        "narHash": "sha256-oV695RvbAE4+R9pcsT9shmp6zE/+IZe6evHWX63f2Qg=",
         "owner": "nix-community",
         "repo": "home-manager",
-        "rev": "7aae0ee71a17b19708b93b3ed448a1a0952bf111",
+        "rev": "fc3add429f21450359369af74c2375cb34a2d204",
         "type": "github"
       },
       "original": {
@@ -290,11 +308,11 @@
         "pre-commit-hooks": "pre-commit-hooks"
       },
       "locked": {
-        "lastModified": 1744142264,
-        "narHash": "sha256-h5KyodobZm8dx/HSNN+basgdmjxrQxudjrss4gAQpZk=",
+        "lastModified": 1752093877,
+        "narHash": "sha256-P0TySh6sQl1EhfxjW9ZqGxEyUBSsEpdnchOe1QB0pLA=",
         "owner": "oddlama",
         "repo": "nix-topology",
-        "rev": "f49121cbbf4a86c560638ade406d99ee58deb7aa",
+        "rev": "6a536c4b686ee4bcf07a7b0f8b823584560e2633",
         "type": "github"
       },
       "original": {
@@ -328,15 +346,15 @@
     },
     "nixpkgs": {
       "locked": {
-        "lastModified": 1750134718,
-        "narHash": "sha256-v263g4GbxXv87hMXMCpjkIxd/viIF7p3JpJrwgKdNiI=",
-        "owner": "nixos",
+        "lastModified": 1755615617,
+        "narHash": "sha256-HMwfAJBdrr8wXAkbGhtcby1zGFvs+StOp19xNsbqdOg=",
+        "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "9e83b64f727c88a7711a2c463a7b16eedb69a84c",
+        "rev": "20075955deac2583bb12f07151c2df830ef346b4",
         "type": "github"
       },
       "original": {
-        "owner": "nixos",
+        "owner": "NixOS",
         "ref": "nixos-unstable",
         "repo": "nixpkgs",
         "type": "github"
@@ -360,11 +378,11 @@
     },
     "nixpkgs_2": {
       "locked": {
-        "lastModified": 1750134718,
-        "narHash": "sha256-v263g4GbxXv87hMXMCpjkIxd/viIF7p3JpJrwgKdNiI=",
+        "lastModified": 1755186698,
+        "narHash": "sha256-wNO3+Ks2jZJ4nTHMuks+cxAiVBGNuEBXsT29Bz6HASo=",
         "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "9e83b64f727c88a7711a2c463a7b16eedb69a84c",
+        "rev": "fbcf476f790d8a217c3eab4e12033dc4a0f6d23c",
         "type": "github"
       },
       "original": {
@@ -376,6 +394,22 @@
     },
     "nixpkgs_3": {
       "locked": {
+        "lastModified": 1755186698,
+        "narHash": "sha256-wNO3+Ks2jZJ4nTHMuks+cxAiVBGNuEBXsT29Bz6HASo=",
+        "owner": "nixos",
+        "repo": "nixpkgs",
+        "rev": "fbcf476f790d8a217c3eab4e12033dc4a0f6d23c",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nixos",
+        "ref": "nixos-unstable",
+        "repo": "nixpkgs",
+        "type": "github"
+      }
+    },
+    "nixpkgs_4": {
+      "locked": {
         "lastModified": 1744868846,
         "narHash": "sha256-5RJTdUHDmj12Qsv7XOhuospjAjATNiTMElplWnJE9Hs=",
         "owner": "NixOS",
@@ -393,15 +427,14 @@
     "nur": {
       "inputs": {
         "flake-parts": "flake-parts_2",
-        "nixpkgs": "nixpkgs_2",
-        "treefmt-nix": "treefmt-nix_2"
+        "nixpkgs": "nixpkgs_3"
       },
       "locked": {
-        "lastModified": 1750305956,
-        "narHash": "sha256-o3Y5v3KmqKOEudWqBKX0utCOMvn/+hbEhWEZklS1Ej0=",
+        "lastModified": 1755566258,
+        "narHash": "sha256-bLDKNtjyDjMOK6w2dsRRRPKr2GzcKOdIjsiJd2FbZuA=",
         "owner": "nix-community",
         "repo": "NUR",
-        "rev": "45c311c54cf6b948161b056f07b3e66515273315",
+        "rev": "b54ab372b6c2831be68f7302142bdfae08204756",
         "type": "github"
       },
       "original": {
@@ -466,12 +499,13 @@
     },
     "root": {
       "inputs": {
+        "deep-research": "deep-research",
         "disko": "disko",
         "home-manager": "home-manager",
         "lanzaboote": "lanzaboote",
         "nix-topology": "nix-topology",
         "nixos-dns": "nixos-dns",
-        "nixpkgs": "nixpkgs",
+        "nixpkgs": "nixpkgs_2",
         "nur": "nur",
         "scripts": "scripts",
         "sops-nix": "sops-nix",
@@ -521,14 +555,14 @@
     },
     "sops-nix": {
       "inputs": {
-        "nixpkgs": "nixpkgs_3"
+        "nixpkgs": "nixpkgs_4"
       },
       "locked": {
-        "lastModified": 1750119275,
-        "narHash": "sha256-Rr7Pooz9zQbhdVxux16h7URa6mA80Pb/G07T4lHvh0M=",
+        "lastModified": 1754988908,
+        "narHash": "sha256-t+voe2961vCgrzPFtZxha0/kmFSHFobzF00sT8p9h0U=",
         "owner": "Mic92",
         "repo": "sops-nix",
-        "rev": "77c423a03b9b2b79709ea2cb63336312e78b72e2",
+        "rev": "3223c7a92724b5d804e9988c6b447a0d09017d48",
         "type": "github"
       },
       "original": {
@@ -617,27 +651,6 @@
         "type": "github"
       }
     },
-    "treefmt-nix_2": {
-      "inputs": {
-        "nixpkgs": [
-          "nur",
-          "nixpkgs"
-        ]
-      },
-      "locked": {
-        "lastModified": 1733222881,
-        "narHash": "sha256-JIPcz1PrpXUCbaccEnrcUS8jjEb/1vJbZz5KkobyFdM=",
-        "owner": "numtide",
-        "repo": "treefmt-nix",
-        "rev": "49717b5af6f80172275d47a418c9719a31a78b53",
-        "type": "github"
-      },
-      "original": {
-        "owner": "numtide",
-        "repo": "treefmt-nix",
-        "type": "github"
-      }
-    },
     "wallpapers": {
       "locked": {
         "lastModified": 1710138216,
diff --git a/nix/flake.nix b/nix/flake.nix
index c2e1c0f..be9089f 100644
--- a/nix/flake.nix
+++ b/nix/flake.nix
@@ -12,6 +12,9 @@
       url = "github:oddlama/nix-topology";
       inputs.nixpkgs.follows = "nixpkgs";
     };
+    deep-research = {
+      url = "github:ret2pop/ollama-deep-researcher";
+    };
     home-manager = {
 	    url = "github:nix-community/home-manager/release-25.05";
 	    inputs.nixpkgs.follows = "nixpkgs";
@@ -30,7 +33,7 @@
     };
   };
 
-  outputs = { self, nixpkgs, home-manager, nur, disko, lanzaboote, sops-nix, nix-topology, nixos-dns, ... }@attrs:
+  outputs = { self, nixpkgs, home-manager, nur, disko, lanzaboote, sops-nix, nix-topology, nixos-dns, deep-research, ... }@attrs:
     let
       system = "x86_64-linux";
       pkgs = import nixpkgs { inherit system; };
@@ -49,6 +52,11 @@
             { networking.hostName = "${hostname}"; }
             nix-topology.nixosModules.default
           ] else [
+            {
+              environment.systemPackages = with nixpkgs.lib; [
+                deep-research.packages.${system}.deep-research
+              ];
+            }
             nix-topology.nixosModules.default
             lanzaboote.nixosModules.lanzaboote
             disko.nixosModules.disko
diff --git a/nix/modules/home/default.nix b/nix/modules/home/default.nix
index bebd670..614373b 100644
--- a/nix/modules/home/default.nix
+++ b/nix/modules/home/default.nix
@@ -170,6 +170,7 @@
 			                kdePackages.kdenlive
 			                kicad
                       murmur
+                      silver-searcher
 					          ]) else []);
 
     monorepo.profiles = {
diff --git a/nix/modules/home/zsh.nix b/nix/modules/home/zsh.nix
index ef0f5fd..31c7680 100644
--- a/nix/modules/home/zsh.nix
+++ b/nix/modules/home/zsh.nix
@@ -7,6 +7,7 @@
     export EXTRA_CCFLAGS="-I/usr/include"
     source ${pkgs.zsh-vi-mode}/share/zsh-vi-mode/zsh-vi-mode.plugin.zsh
     export QT_QPA_PLATFORM="wayland"
+    export OLLAMA_MODEL="qwen3:14b"
     '';
 
     localVariables = {